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Martin Hope
UsingFedora35
Asked: 2022-06-15 03:24:54 +0800 CST
  • 0

I want my data to be persistent in the Docker container in which I am building a neo4j database. However, the commands I've found don't seem to apply to my situation. In fact, it seems that we should do:

docker run -p 7474:7474 -p 7687:7687 neo4j --volume=$HOME/neo4j/data:/data

But in my case there is no neo4 in $HOME:

bash-5.1$ cd $HOME/
.bash_history    .config/         Documents/       .gitkraken/      .gphoto/         .lesshst         Music/           Public/          Templates/       .wget-hsts       
.cache/          Desktop/         Downloads/       .gnome/          .ipython/        .local/          Pictures/        .ssh/            Videos/          
.cert/           .docker/         .gitconfig       .gnupg/          .jupyter/        .mozilla/        .pki/            Téléchargements/ .vscode/

So I already have a neo4j image and it works great:

bash-5.1$ docker run -p 7474:7474 -p 7687:7687 neo4j
2022-01-14 11:11:24.351+0000 INFO  Starting...
2022-01-14 11:11:25.469+0000 INFO  ======== Neo4j 4.3.6 ========
2022-01-14 11:11:26.639+0000 INFO  Initializing system graph model for component 'security-users' with version -1 and status UNINITIALIZED
2022-01-14 11:11:26.643+0000 INFO  Setting up initial user from defaults: neo4j
2022-01-14 11:11:26.643+0000 INFO  Creating new user 'neo4j' (passwordChangeRequired=true, suspended=false)
2022-01-14 11:11:26.652+0000 INFO  Setting version for 'security-users' to 3
2022-01-14 11:11:26.654+0000 INFO  After initialization of system graph model component 'security-users' have version 3 and status CURRENT
2022-01-14 11:11:26.657+0000 INFO  Performing postInitialization step for component 'security-users' with version 3 and status CURRENT
2022-01-14 11:11:26.967+0000 INFO  Bolt enabled on 0.0.0.0:7687.
2022-01-14 11:11:27.680+0000 INFO  Remote interface available at http://localhost:7474/
2022-01-14 11:11:27.681+0000 INFO  Started.
docker
Martin Hope
UsingFedora35
Asked: 2022-05-12 11:07:01 +0800 CST
  • 4

When I try to run a docker container that starts jupyter with the os command inside a neo4J script or docker image I get a network problem. I have ERR_SOCKET_NOT_CONNECTED or ERR_CONNECTION_REFUSED

ERR_SOCKET_NOT_CONNECTED

When I run jupyter notebook everything seems to work fine in the terminal:

bash-5.1$ docker run -it -e DISPLAY=$DISPLAY -v /tmp/.X11-unix:/tmp/.X11-unix seriousgame:latest
Run bokeh server? ([y]/n) 
n
Run jupyter server? ([y]/n) 
y
[I 10:14:20.667 NotebookApp] Writing notebook server cookie secret to /root/.local/share/jupyter/runtime/notebook_cookie_secret
[W 2021-12-13 10:14:20.942 LabApp] 'allow_root' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release.
[W 2021-12-13 10:14:20.942 LabApp] 'allow_root' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release.
[I 2021-12-13 10:14:20.945 LabApp] JupyterLab extension loaded from /usr/local/lib/python3.6/dist-packages/jupyterlab
[I 2021-12-13 10:14:20.945 LabApp] JupyterLab application directory is /usr/local/share/jupyter/lab
[I 10:14:20.948 NotebookApp] Serving notebooks from local directory: /home/serious-game
[I 10:14:20.948 NotebookApp] Jupyter Notebook 6.4.6 is running at:
[I 10:14:20.948 NotebookApp] http://localhost:8888/?token=Ihavetohidethis,right?
[I 10:14:20.948 NotebookApp]  or http://127.0.0.1:8888/?token=Ihavetohidethis,right?
[I 10:14:20.948 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[W 10:14:20.950 NotebookApp] No web browser found: could not locate runnable browser.
[C 10:14:20.950 NotebookApp] 
    
    To access the notebook, open this file in a browser:
        file:///root/.local/share/jupyter/runtime/nbserver-8-open.html
    Or copy and paste one of these URLs:
        http://localhost:8888/?token=Ihavetohidethis,right?
     or http://127.0.0.1:8888/?token=Ihavetohidethis,right?

But none of the links work... I think it's because jupyter cannot be accessed from the docker image. Because when I did it from the machine where there is jupyter I can access the notebook:

enter image description here

Jupyterlab is in the requirements, I don't know if it's enough:

bash-5.1$ cat requirements.txt 
bokeh
jupyterlab
matplotlib
networkx
pandas
scipy

The secure Dockerfile downloading requirements:

bash-5.1$ cat Dockerfile 
#############################################################################################################
#
#   Creation du container
#
##############################################################################################################

FROM nvidia/cuda:10.2-base-ubuntu18.04
MAINTAINER me

EXPOSE 5006
EXPOSE 8888

ENV DEBIAN_FRONTEND noninteractive
ENV WD=/home/serious-game/
WORKDIR ${WD}


# Add git and ssh
RUN apt-get -y update && \
    apt-get -y upgrade && \
    apt-get -y install git ssh pkg-config python3-pip python3-opencv

# Dépendances python
COPY requirements.txt  /requirements.txt
RUN cd / && \
     python3 -m pip install --upgrade pip && \
    pip3 install -r requirements.txt

RUN ls
COPY start.py /start.py
CMD ["/start.py"]
ENTRYPOINT ["python3"]

So it seems to be a network error because when I tried to move the notebook from the container's localhost I keep getting the error "This site can't be reached" ERR_SOCKET_NOT_CONNECTED.

inpt = input("Run jupyter server? ([y]/n) \n")
if inpt.upper() in ["YES", "Y", ""]:
    os.system("jupyter-notebook --ip 0.0.0.0 --allow-root")
    return

Here is the full result:

bash-5.1$ docker run -it -e DISPLAY=$DISPLAY -v /tmp/.X11-unix:/tmp/.X11-unix -p 8888:8888 seriousgame:latest
Run bokeh server? ([y]/n) 
n
Run jupyter server? ([y]/n) 

[I 09:45:21.148 NotebookApp] Writing notebook server cookie secret to /root/.local/share/jupyter/runtime/notebook_cookie_secret
[W 2021-12-16 09:45:21.416 LabApp] 'allow_root' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release.
[W 2021-12-16 09:45:21.416 LabApp] 'allow_root' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release.
[I 2021-12-16 09:45:21.418 LabApp] JupyterLab extension loaded from /usr/local/lib/python3.6/dist-packages/jupyterlab
[I 2021-12-16 09:45:21.419 LabApp] JupyterLab application directory is /usr/local/share/jupyter/lab
[I 09:45:21.422 NotebookApp] Serving notebooks from local directory: /home/serious-game
[I 09:45:21.422 NotebookApp] Jupyter Notebook 6.4.6 is running at:
[I 09:45:21.422 NotebookApp] http://localhost:8888/?token=addd2ba3162ec37688def2cf63157864cd40b81cf4de42f8
[I 09:45:21.422 NotebookApp]  or http://127.0.0.1:8888/?token=addd2ba3162ec37688def2cf63157864cd40b81cf4de42f8
[I 09:45:21.422 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[W 09:45:21.424 NotebookApp] No web browser found: could not locate runnable browser.
[C 09:45:21.424 NotebookApp] 
    
    To access the notebook, open this file in a browser:
        file:///root/.local/share/jupyter/runtime/nbserver-8-open.html
    Or copy and paste one of these URLs:
        http://localhost:8888/?token=addd2ba3162ec37688def2cf63157864cd40b81cf4de42f8
     or http://127.0.0.1:8888/?token=addd2ba3162ec37688def2cf63157864cd40b81cf4de42f8

ERR_CONNECTION_REFUSED

Interestingly I have a similar network issue with when running a neo4j docker image I can't get to the neo4j docker image it tried to run:

bash-5.1$ docker run neo4j
^[[1;5C2021-12-16 09:55:17.973+0000 INFO  Starting...
2021-12-16 09:55:18.312+0000 INFO  This instance is ServerId{d3a250fb} (d3a250fb-24b6-400d-82d2-5ff00740060f)
2021-12-16 09:55:19.163+0000 INFO  ======== Neo4j 4.4.1 ========
2021-12-16 09:55:20.406+0000 INFO  Initializing system graph model for component 'security-users' with version -1 and status UNINITIALIZED
2021-12-16 09:55:20.410+0000 INFO  Setting up initial user from defaults: neo4j
2021-12-16 09:55:20.411+0000 INFO  Creating new user 'neo4j' (passwordChangeRequired=true, suspended=false)
2021-12-16 09:55:20.422+0000 INFO  Setting version for 'security-users' to 3
2021-12-16 09:55:20.425+0000 INFO  After initialization of system graph model component 'security-users' have version 3 and status CURRENT
2021-12-16 09:55:20.429+0000 INFO  Performing postInitialization step for component 'security-users' with version 3 and status CURRENT
2021-12-16 09:55:20.739+0000 INFO  Bolt enabled on 0.0.0.0:7687.
2021-12-16 09:55:21.298+0000 INFO  Remote interface available at http://localhost:7474/
2021-12-16 09:55:21.300+0000 INFO  id: 6A9C435FEE30E82F3EF0611B5D98AB44CCF970739EA66D61896B3C801FA2A2B7
2021-12-16 09:55:21.300+0000 INFO  name: system
2021-12-16 09:55:21.301+0000 INFO  creationDate: 2021-12-16T09:55:19.614Z
2021-12-16 09:55:21.301+0000 INFO  Started.

And I get ERR_CONNECTION_REFUSED

enter image description here

I'll try a Django webapp and add the results.

Maybe there is a problem in the IP address?

bash-5.1$ ip addr
1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default qlen 1000
    link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
    inet 127.0.0.1/8 scope host lo
       valid_lft forever preferred_lft forever
    inet6 ::1/128 scope host 
       valid_lft forever preferred_lft forever
2: enp3s0: <NO-CARRIER,BROADCAST,MULTICAST,UP> mtu 1500 qdisc fq_codel state DOWN group default qlen 1000
    link/ether d8:bb:c1:79:cc:2e brd ff:ff:ff:ff:ff:ff
3: wlp5s0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue state UP group default qlen 1000
    link/ether 64:6e:e0:f0:32:c3 brd ff:ff:ff:ff:ff:ff
    inet 192.168.1.178/24 brd 192.168.1.255 scope global dynamic noprefixroute wlp5s0
       valid_lft 168207sec preferred_lft 168207sec
    inet6 fe80::41c7:dafd:7a6:4f44/64 scope link noprefixroute 
       valid_lft forever preferred_lft forever
4: docker0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue state UP group default 
    link/ether 02:42:20:72:95:51 brd ff:ff:ff:ff:ff:ff
    inet 172.17.0.1/16 brd 172.17.255.255 scope global docker0
       valid_lft forever preferred_lft forever
    inet6 fe80::42:20ff:fe72:9551/64 scope link 
       valid_lft forever preferred_lft forever
10: tun0: <POINTOPOINT,MULTICAST,NOARP,UP,LOWER_UP> mtu 1500 qdisc fq_codel state UNKNOWN group default qlen 500
    link/none 
    inet 192.168.254.99/24 brd 192.168.254.255 scope global noprefixroute tun0
       valid_lft forever preferred_lft forever
    inet6 fe80::7be4:d988:98c1:8551/64 scope link stable-privacy 
       valid_lft forever preferred_lft forever
18: veth6503edf@if17: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue master docker0 state UP group default 
    link/ether c2:c7:b8:5f:39:6f brd ff:ff:ff:ff:ff:ff link-netnsid 0
    inet6 fe80::c0c7:b8ff:fe5f:396f/64 scope link 
       valid_lft forever preferred_lft forever

So I can't get to the urls so far, any other ideas?

Volume is not insurance?

The colleague who left me this image tells me that the working directory must be mounted as a volume.

bash-5.1$ docker run -p 8888:8888 -it -e DISPLAY=$DISPLAY -v /home/ac/Documents/Work/serious-game seriousgame:latest

But I get the same error ERR_SOCKET_NOT_CONNECTED

And it seems that it works for the correct directory, doesn't it?

[I 2021-12-13 10:14:20.945 LabApp] JupyterLab application directory is /usr/local/share/jupyter/lab
[I 10:14:20.948 NotebookApp] Serving notebooks from local directory: /home/serious-game

With the container port visible from the outside

docker run -p 8888:8888 -it -e DISPLAY=$DISPLAY -v /tmp/.X11-unix:/tmp/.X11-unix seriousgame:latest

But here is what the browser tells me:

enter image description here

Problems in IP addr?

bash-5.1$ ip addr
1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default qlen 1000
    link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
    inet 127.0.0.1/8 scope host lo
       valid_lft forever preferred_lft forever
    inet6 ::1/128 scope host 
       valid_lft forever preferred_lft forever
2: enp3s0: <NO-CARRIER,BROADCAST,MULTICAST,UP> mtu 1500 qdisc fq_codel state DOWN group default qlen 1000
    link/ether d8:bb:c1:79:cc:2e brd ff:ff:ff:ff:ff:ff
3: wlp5s0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue state UP group default qlen 1000
    link/ether 64:6e:e0:f0:32:c3 brd ff:ff:ff:ff:ff:ff
    inet 192.168.1.178/24 brd 192.168.1.255 scope global dynamic noprefixroute wlp5s0
       valid_lft 168207sec preferred_lft 168207sec
    inet6 fe80::41c7:dafd:7a6:4f44/64 scope link noprefixroute 
       valid_lft forever preferred_lft forever
4: docker0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue state UP group default 
    link/ether 02:42:20:72:95:51 brd ff:ff:ff:ff:ff:ff
    inet 172.17.0.1/16 brd 172.17.255.255 scope global docker0
       valid_lft forever preferred_lft forever
    inet6 fe80::42:20ff:fe72:9551/64 scope link 
       valid_lft forever preferred_lft forever
10: tun0: <POINTOPOINT,MULTICAST,NOARP,UP,LOWER_UP> mtu 1500 qdisc fq_codel state UNKNOWN group default qlen 500
    link/none 
    inet 192.168.254.99/24 brd 192.168.254.255 scope global noprefixroute tun0
       valid_lft forever preferred_lft forever
    inet6 fe80::7be4:d988:98c1:8551/64 scope link stable-privacy 
       valid_lft forever preferred_lft forever
18: veth6503edf@if17: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue master docker0 state UP group default 
    link/ether c2:c7:b8:5f:39:6f brd ff:ff:ff:ff:ff:ff link-netnsid 0
    inet6 fe80::c0c7:b8ff:fe5f:396f/64 scope link 
       valid_lft forever preferred_lft forever
docker
Martin Hope
UsingFedora35
Asked: 2022-05-08 03:05:25 +0800 CST
  • 2

I am trying to build a Docker image from a dockerfile command I received from the previous developer:

bash-5.1$ ls
data_collection  demonstrateur.ipynb  demo.py  Dockerfile  examples  README.md  requirements.txt  serious_game  start.py  test
bash-5.1$ docker build -t serious-game:0.0.1 -t serious-game:latest Dockerfile .
"docker build" requires exactly 1 argument.
See 'docker build --help'.

Usage:  docker build [OPTIONS] PATH | URL | -

Build an image from a Dockerfile

I am a complete beginner to docker but why did you put two -t arguments? "-t", this seems to tell the main process inside docker that its input is a terminal device.

docker